Sobic.006G058100.1

Description : CLPC homologue 1

Gene families : OG_01_0005797 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005797_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.006G058100.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.006G058100.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_164
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_51

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	ISM	GOs from InterProScan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR019489	Clp_ATPase_C	Pfam	814	893
IPR018368	ClpA/B_CS1	ProSitePatterns	386	398
IPR027417	P-loop_NTPase	Gene3D	586	812
IPR004176	Clp_R_dom	ProSiteProfiles	91	233
IPR004176	Clp_R_dom	Pfam	181	232
IPR004176	Clp_R_dom	Pfam	105	157
IPR003959	ATPase_AAA_core	Pfam	296	412
IPR036628	Clp_N_dom_sf	Gene3D	90	239
IPR041546	ClpA/ClpB_AAA_lid	Pfam	434	535
IPR001270	ClpA/B	PRINTS	638	656
IPR001270	ClpA/B	PRINTS	745	759
IPR001270	ClpA/B	PRINTS	683	701
IPR001270	ClpA/B	PRINTS	712	730
IPR019489	Clp_ATPase_C	SMART	814	904
IPR027417	P-loop_NTPase	Gene3D	244	434
IPR027417	P-loop_NTPase	SUPERFAMILY	251	532
IPR003959	ATPase_AAA_core	Pfam	633	807
IPR036628	Clp_N_dom_sf	SUPERFAMILY	92	233
IPR028299	ClpA/B_CS2	ProSitePatterns	668	686
IPR001943	UVR_dom	ProSiteProfiles	508	543
IPR003593	AAA+_ATPase	SMART	634	815
IPR003593	AAA+_ATPase	SMART	291	431
IPR027417	P-loop_NTPase	SUPERFAMILY	583	902

No CAZYmes available for this sequence

External Links

No external refs found!