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  5. Sobic.006G061000.1

Sobic.006G061000.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0013003 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0013003_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.006G061000.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.006G061000.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_125
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_71


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt Pfam 161 189
IPR002885 Pentatricopeptide_rpt Pfam 369 396
IPR002885 Pentatricopeptide_rpt Pfam 267 294
IPR002885 Pentatricopeptide_rpt Pfam 331 359
IPR002885 Pentatricopeptide_rpt Pfam 135 158
IPR002885 Pentatricopeptide_rpt Pfam 196 225
IPR002885 Pentatricopeptide_rpt Pfam 296 326
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 205 451
IPR002885 Pentatricopeptide_rpt TIGRFAM 196 229
IPR002885 Pentatricopeptide_rpt TIGRFAM 296 329
IPR002885 Pentatricopeptide_rpt TIGRFAM 164 190
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 294 328
IPR011990 TPR-like_helical_dom_sf Gene3D 198 333
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 162 192
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 193 227
IPR011990 TPR-like_helical_dom_sf Gene3D 88 193
IPR011990 TPR-like_helical_dom_sf Gene3D 334 427

No CAZYmes available for this sequence

No external refs found!