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  5. Sobic.006G071362.1

Sobic.006G071362.1


Description : ABC2 homolog 12


Gene families : OG_01_0011402 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0011402_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.006G071362.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.006G071362.1 No neighbors in network
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_244


Type GO Term Name Evidence Source
MF GO:0005524 ATP binding ISM GOs from InterProScan
BP GO:0055085 transmembrane transport ISM GOs from InterProScan
MF GO:0140359 ABC-type transporter activity ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR039421 Type_1_exporter PANTHER 107 619
IPR003439 ABC_transporter-like_ATP-bd ProSiteProfiles 389 628
IPR003593 AAA+_ATPase SMART 415 605
IPR003439 ABC_transporter-like_ATP-bd Pfam 407 557
IPR011527 ABC1_TM_dom Pfam 112 341
IPR011527 ABC1_TM_dom ProSiteProfiles 111 355
IPR027417 P-loop_NTPase Gene3D 381 624
IPR027417 P-loop_NTPase SUPERFAMILY 378 617
IPR036640 ABC1_TM_sf Gene3D 70 368
IPR017871 ABC_transporter-like_CS ProSitePatterns 529 543
IPR036640 ABC1_TM_sf SUPERFAMILY 108 375

No CAZYmes available for this sequence

No external refs found!