Sobic.006G080500.1

Description : basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Gene families : OG_01_0035162 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0035162_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.006G080500.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.006G080500.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_114
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_132

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009888	tissue development	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009960	endosperm development	ISM	GOs from InterProScan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032502	developmental process	None	Extended
MF	GO:0046983	protein dimerization activity	ISM	GOs from InterProScan
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR011598	bHLH_dom	Pfam	372	416
IPR036638	HLH_DNA-bd_sf	Gene3D	361	431
IPR011598	bHLH_dom	ProSiteProfiles	365	415
IPR045239	bHLH95_bHLH	CDD	370	423
IPR011598	bHLH_dom	SMART	371	421
IPR044278	BHLH95-like	PANTHER	228	646
IPR044278	BHLH95-like	PANTHER	1	60
IPR044278	BHLH95-like	PANTHER	156	220
IPR044278	BHLH95-like	PANTHER	90	155
IPR036638	HLH_DNA-bd_sf	SUPERFAMILY	368	430

No CAZYmes available for this sequence

External Links

No external refs found!

Sobic.006G080500.1

Expression Profile

Co-expression Networks

Functional Annotation