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  5. Sobic.006G085800.1

Sobic.006G085800.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0014962 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0014962_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.006G085800.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.006G085800.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_125
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_43


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt Pfam 348 395
IPR002885 Pentatricopeptide_rpt Pfam 215 263
IPR002885 Pentatricopeptide_rpt Pfam 456 502
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 185 215
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 82 116
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 456 490
IPR011990 TPR-like_helical_dom_sf Gene3D 521 678
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 329 617
IPR011990 TPR-like_helical_dom_sf Gene3D 132 271
IPR011990 TPR-like_helical_dom_sf Gene3D 354 520
IPR011990 TPR-like_helical_dom_sf Gene3D 11 131
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 216 250
IPR002885 Pentatricopeptide_rpt TIGRFAM 352 381
IPR002885 Pentatricopeptide_rpt TIGRFAM 531 554
IPR002885 Pentatricopeptide_rpt TIGRFAM 55 78
IPR002885 Pentatricopeptide_rpt TIGRFAM 458 491
IPR002885 Pentatricopeptide_rpt TIGRFAM 190 218
IPR002885 Pentatricopeptide_rpt TIGRFAM 84 107
IPR002885 Pentatricopeptide_rpt TIGRFAM 218 252
IPR002885 Pentatricopeptide_rpt TIGRFAM 498 527
IPR002885 Pentatricopeptide_rpt Pfam 56 78
IPR002885 Pentatricopeptide_rpt Pfam 430 453
IPR002885 Pentatricopeptide_rpt Pfam 292 318
IPR002885 Pentatricopeptide_rpt Pfam 530 555
IPR002885 Pentatricopeptide_rpt Pfam 84 107
IPR002885 Pentatricopeptide_rpt Pfam 599 625
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 287 321
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 593 627
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 349 383
IPR011990 TPR-like_helical_dom_sf Gene3D 272 350

No CAZYmes available for this sequence

No external refs found!