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  5. Sobic.006G132500.1

Sobic.006G132500.1


Description : homolog of carrot EP3-3 chitinase


Gene families : OG_01_0002667 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002667_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.006G132500.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.006G132500.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_69
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_6


Type GO Term Name Evidence Source
MF GO:0004568 chitinase activity ISM GOs from InterProScan
BP GO:0005975 carbohydrate metabolic process ISM GOs from InterProScan
BP GO:0006032 chitin catabolic process ISM GOs from InterProScan
MF GO:0008061 chitin binding ISM GOs from InterProScan
BP GO:0016998 cell wall macromolecule catabolic process ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR018371 Chitin-binding_1_CS ProSitePatterns 32 51
IPR023346 Lysozyme-like_dom_sf SUPERFAMILY 76 279
IPR001002 Chitin-bd_1 ProSiteProfiles 27 62
IPR036861 Endochitinase-like_sf Gene3D 22 62
IPR001002 Chitin-bd_1 SMART 29 60
IPR016283 Glyco_hydro_19 PIRSF 1 279
IPR000726 Glyco_hydro_19_cat ProSitePatterns 213 223
IPR001002 Chitin-bd_1 Pfam 27 60
IPR000726 Glyco_hydro_19_cat Pfam 83 225
IPR000726 Glyco_hydro_19_cat Pfam 232 279
IPR036861 Endochitinase-like_sf SUPERFAMILY 27 61
HMM Family HMM Length Query Length e-Value Query Start Query End
CBM18 38 280 1.6e-10 26 60
GH19 231 280 5.1e-75 77 279
No external refs found!