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  5. Sobic.006G149800.1

Sobic.006G149800.1


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0008362 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0008362_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.006G149800.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.006G149800.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_101
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_95


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt Pfam 296 336
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 119 153
IPR011990 TPR-like_helical_dom_sf Gene3D 276 382
IPR011990 TPR-like_helical_dom_sf Gene3D 170 275
IPR011990 TPR-like_helical_dom_sf Gene3D 47 169
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 297 331
IPR002885 Pentatricopeptide_rpt Pfam 143 200
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 332 366
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 226 260
IPR002885 Pentatricopeptide_rpt TIGRFAM 122 155
IPR002885 Pentatricopeptide_rpt TIGRFAM 334 366
IPR002885 Pentatricopeptide_rpt TIGRFAM 300 332
IPR002885 Pentatricopeptide_rpt TIGRFAM 229 261
IPR002885 Pentatricopeptide_rpt Pfam 230 258

No CAZYmes available for this sequence

No external refs found!