1. Home
  2. Species
  3. Sorghum bicolor
  4. Sequence
  5. Sobic.006G156300.1

Sobic.006G156300.1


Description : Transducin/WD40 repeat-like superfamily protein


Gene families : OG_01_0003486 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003486_tree

Sequence : cds (download), rna (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.006G156300.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.006G156300.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_254
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_85


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR040324 WDR44/Dgr2 PANTHER 6 790
IPR001680 WD40_rpt SMART 425 463
IPR001680 WD40_rpt SMART 466 505
IPR001680 WD40_rpt SMART 507 546
IPR001680 WD40_rpt SMART 599 640
IPR001680 WD40_rpt SMART 313 352
IPR001680 WD40_rpt SMART 562 598
IPR019775 WD40_repeat_CS ProSitePatterns 339 353
IPR001680 WD40_rpt ProSiteProfiles 432 472
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 318 643
IPR001680 WD40_rpt ProSiteProfiles 320 361
IPR001680 WD40_rpt Pfam 601 639
IPR001680 WD40_rpt Pfam 468 505
IPR001680 WD40_rpt Pfam 427 462
IPR001680 WD40_rpt Pfam 320 351
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 409 684
IPR001680 WD40_rpt ProSiteProfiles 472 514
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 274 376
IPR020472 G-protein_beta_WD-40_rep PRINTS 450 464
IPR020472 G-protein_beta_WD-40_rep PRINTS 492 506
IPR020472 G-protein_beta_WD-40_rep PRINTS 339 353

No CAZYmes available for this sequence

No external refs found!