Sobic.006G161500.1

Description : Translation elongation factor EFG/EF2 protein

Gene families : OG_01_0010391 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0010391_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.006G161500.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.006G161500.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_68
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_175

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003746	translation elongation factor activity	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	ISM	GOs from InterProScan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006414	translational elongation	ISM	GOs from InterProScan
MF	GO:0008135	translation factor activity, RNA binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
CC	GO:0009507	chloroplast	ISM	GOs from InterProScan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
MF	GO:0045182	translation regulator activity	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0090079	translation regulator activity, nucleic acid binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR020568	Ribosomal_Su5_D2-typ_SF	SUPERFAMILY	557	677
IPR004540	Transl_elong_EFG/EF2	Hamap	84	770
IPR014721	Ribsml_uS5_D2-typ_fold_subgr	Gene3D	563	765
IPR000640	EFG_V-like	Pfam	678	765
IPR031157	G_TR_CS	ProSitePatterns	129	144
IPR041095	EFG_II	Pfam	482	555
IPR000795	T_Tr_GTP-bd_dom	PRINTS	172	183
IPR000795	T_Tr_GTP-bd_dom	PRINTS	136	144
IPR000795	T_Tr_GTP-bd_dom	PRINTS	156	166
IPR000795	T_Tr_GTP-bd_dom	PRINTS	208	217
IPR000795	T_Tr_GTP-bd_dom	PRINTS	90	103
IPR030848	EF_G_plantC	Hamap	78	775
IPR027417	P-loop_NTPase	Gene3D	79	369
IPR035649	EFG_V	CDD	681	759
IPR004540	Transl_elong_EFG/EF2	TIGRFAM	81	770
IPR009022	EFG_III	CDD	483	558
IPR005517	Transl_elong_EFG/EF2_IV	CDD	561	676
IPR005517	Transl_elong_EFG/EF2_IV	Pfam	557	675
IPR000795	T_Tr_GTP-bd_dom	Pfam	87	359
IPR004161	EFTu-like_2	Pfam	402	469
IPR035647	EFG_III/V	SUPERFAMILY	681	770
IPR005517	Transl_elong_EFG/EF2_IV	SMART	558	676
IPR000795	T_Tr_GTP-bd_dom	ProSiteProfiles	86	361
IPR009000	Transl_B-barrel_sf	SUPERFAMILY	342	482
IPR027417	P-loop_NTPase	SUPERFAMILY	85	359
IPR000640	EFG_V-like	SMART	678	766
IPR035647	EFG_III/V	SUPERFAMILY	482	559
IPR005225	Small_GTP-bd_dom	TIGRFAM	88	258

No CAZYmes available for this sequence

External Links

No external refs found!

Sobic.006G161500.1

Expression Profile

Co-expression Networks

Functional Annotation