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  5. Sobic.006G165000.1

Sobic.006G165000.1


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG_01_0002922 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002922_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.006G165000.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.006G165000.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_204
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_205


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 171 281
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 366 487
IPR000504 RRM_dom ProSiteProfiles 202 280
IPR035979 RBD_domain_sf SUPERFAMILY 281 446
IPR035979 RBD_domain_sf SUPERFAMILY 203 306
IPR000504 RRM_dom ProSiteProfiles 379 461
IPR000504 RRM_dom SMART 283 362
IPR000504 RRM_dom SMART 380 455
IPR000504 RRM_dom SMART 203 276
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 282 365
IPR000504 RRM_dom Pfam 381 445
IPR000504 RRM_dom Pfam 284 349
IPR000504 RRM_dom Pfam 204 272
IPR000504 RRM_dom ProSiteProfiles 282 366

No CAZYmes available for this sequence

No external refs found!