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  5. Sobic.006G165800.1

Sobic.006G165800.1


Description : SU(VAR)3-9 homolog 5


Gene families : OG_01_0010316 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0010316_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.006G165800.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.006G165800.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_301
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_116


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
CC GO:0005634 nucleus ISM GOs from InterProScan
MF GO:0008270 zinc ion binding ISM GOs from InterProScan
MF GO:0018024 obsolete histone lysine N-methyltransferase activity ISM GOs from InterProScan
BP GO:0034968 histone lysine methylation ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001214 SET_dom Pfam 731 861
IPR036987 SRA-YDG_sf Gene3D 446 600
IPR003105 SRA_YDG SMART 443 591
IPR007728 Pre-SET_dom ProSiteProfiles 657 717
IPR007728 Pre-SET_dom SMART 613 704
IPR001214 SET_dom ProSiteProfiles 720 861
IPR003105 SRA_YDG ProSiteProfiles 448 587
IPR007728 Pre-SET_dom Pfam 617 712
IPR001214 SET_dom SMART 720 867
IPR003105 SRA_YDG Pfam 447 591
IPR003616 Post-SET_dom ProSiteProfiles 875 891
IPR003616 Post-SET_dom SMART 875 891
IPR015947 PUA-like_sf SUPERFAMILY 444 602

No CAZYmes available for this sequence

No external refs found!