Sobic.006G178400.1

Description : SKU5 similar 5

Gene families : OG_01_0002715 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002715_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.006G178400.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.006G178400.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_295
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_36

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005507	copper ion binding	ISM	GOs from InterProScan
MF	GO:0016491	oxidoreductase activity	ISM	GOs from InterProScan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR008972	Cupredoxin	SUPERFAMILY	343	560
IPR001117	Cu-oxidase_2nd	Pfam	157	294
IPR011707	Cu-oxidase-like_N	Pfam	31	144
IPR045087	Cu-oxidase_fam	PANTHER	7	561
IPR008972	Cupredoxin	Gene3D	15	143
IPR008972	Cupredoxin	SUPERFAMILY	151	332
IPR008972	Cupredoxin	Gene3D	155	329
IPR034273	CuRO_1_AAO-like	CDD	25	141
IPR008972	Cupredoxin	Gene3D	341	569
IPR008972	Cupredoxin	SUPERFAMILY	22	171
IPR011706	Cu-oxidase_C	Pfam	429	540

HMM Family	HMM Length	Query Length	e-Value	Query Start	Query End
AA1	358	579	2.1e-72	39	522

External Links

No external refs found!