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  5. Sobic.006G183800.1

Sobic.006G183800.1


Description : splicing factor-related


Gene families : OG_01_0006030 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006030_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.006G183800.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.006G183800.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_17
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_104


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
MF GO:0008270 zinc ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR036875 Znf_CCHC_sf SUPERFAMILY 304 350
IPR004087 KH_dom SMART 186 278
IPR035979 RBD_domain_sf SUPERFAMILY 425 524
IPR004088 KH_dom_type_1 Pfam 201 271
IPR045071 BBP-like PANTHER 12 726
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 416 513
IPR000504 RRM_dom ProSiteProfiles 429 507
IPR036612 KH_dom_type_1_sf Gene3D 178 306
IPR036612 KH_dom_type_1_sf SUPERFAMILY 186 312
IPR032570 SF1-HH Pfam 73 182
IPR001878 Znf_CCHC ProSiteProfiles 308 323
IPR000504 RRM_dom Pfam 431 500
IPR001878 Znf_CCHC SMART 333 349
IPR001878 Znf_CCHC SMART 307 323
IPR000504 RRM_dom SMART 430 503

No CAZYmes available for this sequence

No external refs found!