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Description : Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain
Gene families : OG_01_0011081 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0011081_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.006G191900.1 | |
| Neighborhood | Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.006G191900.1 | No neighbors in network |
| Cluster | Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_158 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0046872 | metal ion binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR009091 | RCC1/BLIP-II | Gene3D | 220 | 469 |
| IPR001849 | PH_domain | Pfam | 15 | 123 |
| IPR000408 | Reg_chr_condens | ProSiteProfiles | 477 | 528 |
| IPR009091 | RCC1/BLIP-II | SUPERFAMILY | 252 | 634 |
| IPR013591 | Brevis_radix_dom | Pfam | 997 | 1049 |
| IPR000408 | Reg_chr_condens | ProSiteProfiles | 310 | 361 |
| IPR000408 | Reg_chr_condens | PRINTS | 293 | 306 |
| IPR000408 | Reg_chr_condens | PRINTS | 401 | 417 |
| IPR000408 | Reg_chr_condens | PRINTS | 576 | 597 |
| IPR000408 | Reg_chr_condens | PRINTS | 417 | 431 |
| IPR000408 | Reg_chr_condens | PRINTS | 312 | 328 |
| IPR000408 | Reg_chr_condens | PRINTS | 518 | 536 |
| IPR000306 | Znf_FYVE | SMART | 631 | 700 |
| IPR009091 | RCC1/BLIP-II | Gene3D | 474 | 645 |
| IPR013591 | Brevis_radix_dom | ProSiteProfiles | 995 | 1050 |
| IPR000408 | Reg_chr_condens | ProSiteProfiles | 362 | 414 |
| IPR000408 | Reg_chr_condens | ProSiteProfiles | 529 | 580 |
| IPR011011 | Znf_FYVE_PHD | SUPERFAMILY | 636 | 705 |
| IPR000408 | Reg_chr_condens | ProSiteProfiles | 581 | 632 |
| IPR000408 | Reg_chr_condens | ProSiteProfiles | 415 | 466 |
| IPR000408 | Reg_chr_condens | ProSiteProfiles | 259 | 309 |
| IPR017455 | Znf_FYVE-rel | ProSiteProfiles | 637 | 699 |
| IPR011993 | PH-like_dom_sf | Gene3D | 13 | 126 |
| IPR000408 | Reg_chr_condens | ProSitePatterns | 453 | 463 |
| IPR000408 | Reg_chr_condens | Pfam | 414 | 463 |
| IPR000408 | Reg_chr_condens | Pfam | 580 | 629 |
| IPR000408 | Reg_chr_condens | Pfam | 479 | 525 |
| IPR000306 | Znf_FYVE | Pfam | 637 | 698 |
| IPR013083 | Znf_RING/FYVE/PHD | Gene3D | 646 | 705 |
No CAZYmes available for this sequence
| No external refs found! |