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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_01_0010592 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0010592_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.006G212000.1 | |
| Neighborhood | Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.006G212000.1 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_185 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_177 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 407 | 441 |
| IPR002625 | Smr_dom | SMART | 662 | 741 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 177 | 298 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 265 | 295 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 233 | 262 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 197 | 223 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 452 | 575 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 302 | 336 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 337 | 371 |
| IPR002625 | Smr_dom | ProSiteProfiles | 665 | 741 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 429 | 473 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 372 | 406 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 299 | 442 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 230 | 264 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 442 | 476 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 269 | 295 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 410 | 441 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 233 | 266 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 376 | 407 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 342 | 372 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 305 | 337 |
| IPR033443 | PPR_long | Pfam | 266 | 424 |
No CAZYmes available for this sequence
| No external refs found! |