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  5. Sobic.006G217200.1

Sobic.006G217200.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0005101 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005101_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.006G217200.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.006G217200.1 No neighbors in network
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_300


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt Pfam 176 224
IPR002885 Pentatricopeptide_rpt Pfam 246 292
IPR002885 Pentatricopeptide_rpt TIGRFAM 214 246
IPR002885 Pentatricopeptide_rpt TIGRFAM 179 212
IPR002885 Pentatricopeptide_rpt TIGRFAM 248 282
IPR002885 Pentatricopeptide_rpt TIGRFAM 319 350
IPR002885 Pentatricopeptide_rpt TIGRFAM 284 316
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 176 210
IPR011990 TPR-like_helical_dom_sf Gene3D 242 309
IPR011990 TPR-like_helical_dom_sf Gene3D 167 241
IPR011990 TPR-like_helical_dom_sf Gene3D 310 362
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 246 280
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 281 315
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 211 245
IPR011990 TPR-like_helical_dom_sf Gene3D 18 158
IPR002885 Pentatricopeptide_rpt Pfam 319 348
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 316 350

No CAZYmes available for this sequence

No external refs found!