1. Home
  2. Species
  3. Sorghum bicolor
  4. Sequence
  5. Sobic.006G222400.1

Sobic.006G222400.1


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG_01_0008061 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0008061_tree

Sequence : cds (download), rna (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.006G222400.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.006G222400.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_310
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_108


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000504 RRM_dom ProSiteProfiles 288 360
IPR035979 RBD_domain_sf SUPERFAMILY 273 389
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 91 170
IPR000504 RRM_dom SMART 93 166
IPR000504 RRM_dom SMART 183 257
IPR000504 RRM_dom SMART 289 356
IPR035979 RBD_domain_sf SUPERFAMILY 55 172
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 171 270
IPR000504 RRM_dom ProSiteProfiles 92 172
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 271 403
IPR000504 RRM_dom Pfam 184 253
IPR000504 RRM_dom Pfam 290 352
IPR000504 RRM_dom Pfam 94 163
IPR000504 RRM_dom ProSiteProfiles 182 261
IPR035979 RBD_domain_sf SUPERFAMILY 173 267

No CAZYmes available for this sequence

No external refs found!