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Description : Regulator of chromosome condensation (RCC1) family protein
Gene families : OG_01_0005144 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005144_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.006G254300.1 | |
| Neighborhood | Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.006G254300.1 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_223 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_74 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003677 | DNA binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR000408 | Reg_chr_condens | Pfam | 261 | 311 |
| IPR000408 | Reg_chr_condens | Pfam | 198 | 257 |
| IPR000408 | Reg_chr_condens | Pfam | 365 | 410 |
| IPR000408 | Reg_chr_condens | Pfam | 141 | 187 |
| IPR000408 | Reg_chr_condens | Pfam | 89 | 138 |
| IPR000408 | Reg_chr_condens | PRINTS | 247 | 263 |
| IPR000408 | Reg_chr_condens | PRINTS | 125 | 138 |
| IPR000408 | Reg_chr_condens | PRINTS | 91 | 107 |
| IPR000408 | Reg_chr_condens | PRINTS | 144 | 160 |
| IPR000408 | Reg_chr_condens | PRINTS | 263 | 277 |
| IPR000408 | Reg_chr_condens | ProSitePatterns | 247 | 257 |
| IPR000408 | Reg_chr_condens | ProSiteProfiles | 261 | 316 |
| IPR000408 | Reg_chr_condens | ProSiteProfiles | 195 | 260 |
| IPR000408 | Reg_chr_condens | ProSiteProfiles | 362 | 415 |
| IPR017956 | AT_hook_DNA-bd_motif | PRINTS | 542 | 552 |
| IPR017956 | AT_hook_DNA-bd_motif | PRINTS | 499 | 509 |
| IPR017956 | AT_hook_DNA-bd_motif | PRINTS | 515 | 526 |
| IPR000408 | Reg_chr_condens | ProSiteProfiles | 317 | 362 |
| IPR000408 | Reg_chr_condens | ProSiteProfiles | 142 | 192 |
| IPR009091 | RCC1/BLIP-II | SUPERFAMILY | 33 | 415 |
| IPR009091 | RCC1/BLIP-II | Gene3D | 5 | 222 |
| IPR009091 | RCC1/BLIP-II | Gene3D | 223 | 465 |
| IPR000408 | Reg_chr_condens | ProSiteProfiles | 90 | 141 |
| IPR028641 | RCC2 | PANTHER | 1 | 531 |
No CAZYmes available for this sequence
| No external refs found! |