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  5. Sobic.006G262800.1

Sobic.006G262800.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0016349 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0016349_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.006G262800.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.006G262800.1 No neighbors in network
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_307


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 364 398
IPR011990 TPR-like_helical_dom_sf Gene3D 73 177
IPR011990 TPR-like_helical_dom_sf Gene3D 282 380
IPR011990 TPR-like_helical_dom_sf Gene3D 1 72
IPR011990 TPR-like_helical_dom_sf Gene3D 186 281
IPR002885 Pentatricopeptide_rpt Pfam 21 68
IPR002885 Pentatricopeptide_rpt Pfam 328 376
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 329 363
IPR002885 Pentatricopeptide_rpt Pfam 98 119
IPR002885 Pentatricopeptide_rpt Pfam 402 425
IPR011990 TPR-like_helical_dom_sf Gene3D 387 537
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 22 56
IPR002885 Pentatricopeptide_rpt TIGRFAM 332 364
IPR002885 Pentatricopeptide_rpt TIGRFAM 24 57

No CAZYmes available for this sequence

No external refs found!