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Description : poly(A) binding protein 2
Gene families : OG_01_0032835 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0032835_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.006G271600.1 | |
| Neighborhood | Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.006G271600.1 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_42 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_224 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | ISM | GOs from InterProScan |
| MF | GO:0003723 | RNA binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR000504 | RRM_dom | Pfam | 321 | 390 |
| IPR000504 | RRM_dom | Pfam | 425 | 494 |
| IPR000504 | RRM_dom | Pfam | 522 | 590 |
| IPR000504 | RRM_dom | Pfam | 231 | 300 |
| IPR000504 | RRM_dom | Pfam | 816 | 883 |
| IPR000504 | RRM_dom | Pfam | 625 | 686 |
| IPR000504 | RRM_dom | Pfam | 719 | 781 |
| IPR000504 | RRM_dom | ProSiteProfiles | 623 | 693 |
| IPR000504 | RRM_dom | ProSiteProfiles | 717 | 788 |
| IPR000504 | RRM_dom | SMART | 230 | 303 |
| IPR000504 | RRM_dom | SMART | 424 | 497 |
| IPR000504 | RRM_dom | SMART | 718 | 784 |
| IPR000504 | RRM_dom | SMART | 624 | 689 |
| IPR000504 | RRM_dom | SMART | 320 | 393 |
| IPR000504 | RRM_dom | SMART | 521 | 593 |
| IPR000504 | RRM_dom | SMART | 815 | 888 |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 794 | 897 |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 119 | 310 |
| IPR035979 | RBD_domain_sf | SUPERFAMILY | 317 | 501 |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 506 | 597 |
| IPR035979 | RBD_domain_sf | SUPERFAMILY | 621 | 786 |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 599 | 700 |
| IPR000504 | RRM_dom | ProSiteProfiles | 229 | 307 |
| IPR035979 | RBD_domain_sf | SUPERFAMILY | 226 | 307 |
| IPR000504 | RRM_dom | ProSiteProfiles | 520 | 597 |
| IPR000504 | RRM_dom | ProSiteProfiles | 423 | 501 |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 311 | 402 |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 709 | 793 |
| IPR035979 | RBD_domain_sf | SUPERFAMILY | 802 | 890 |
| IPR000504 | RRM_dom | ProSiteProfiles | 814 | 892 |
| IPR003954 | RRM_dom_euk | SMART | 230 | 303 |
| IPR003954 | RRM_dom_euk | SMART | 320 | 393 |
| IPR003954 | RRM_dom_euk | SMART | 424 | 497 |
| IPR000504 | RRM_dom | ProSiteProfiles | 319 | 397 |
| IPR035979 | RBD_domain_sf | SUPERFAMILY | 516 | 595 |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 403 | 505 |
No CAZYmes available for this sequence
| No external refs found! |