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  5. Sobic.006G272600.1

Sobic.006G272600.1


Description : AMP-dependent synthetase and ligase family protein


Gene families : OG_01_0006441 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006441_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.006G272600.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.006G272600.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_250
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_17


Type GO Term Name Evidence Source
MF GO:0016874 ligase activity ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR025110 AMP-bd_C Pfam 439 514
IPR042099 ANL_N_sf Gene3D 1 423
IPR045851 AMP-bd_C_sf Gene3D 425 528
IPR020845 AMP-binding_CS ProSitePatterns 180 191
IPR045310 Pcs60-like CDD 51 522
IPR000873 AMP-dep_Synth/Lig_com Pfam 10 430

No CAZYmes available for this sequence

No external refs found!