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Description : Tetratricopeptide repeat (TPR)-like superfamily protein
Gene families : OG_01_0022567 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0022567_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.006G275900.1 | |
| Neighborhood | Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.006G275900.1 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_120 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_427 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| MF | GO:0008270 | zinc ion binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 281 | 315 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 382 | 416 |
| IPR032867 | DYW_dom | Pfam | 556 | 690 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 351 | 381 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 38 | 72 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 207 | 342 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 123 | 206 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 172 | 206 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 519 | 553 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 381 | 429 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 174 | 224 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 384 | 418 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 175 | 202 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 343 | 436 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 2 | 122 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 445 | 566 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 417 | 452 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 43 | 70 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 71 | 97 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 256 | 281 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 457 | 481 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 285 | 312 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 213 | 247 |
No CAZYmes available for this sequence
| No external refs found! |