Sobic.007G043500.2

Description : DNA topoisomerase I alpha

Gene families : OG_01_0000768 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000768_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.007G043500.2
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.007G043500.2
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_62
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_209

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003916	DNA topoisomerase activity	None	Extended
MF	GO:0003917	DNA topoisomerase type I (single strand cut, ATP-independent) activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005694	chromosome	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006265	DNA topological change	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0071103	DNA conformation change	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR001631	TopoI	PRINTS	675	694
IPR001631	TopoI	PRINTS	720	736
IPR001631	TopoI	PRINTS	778	792
IPR001631	TopoI	PRINTS	559	568
IPR001631	TopoI	PRINTS	698	712
IPR001631	TopoI	PRINTS	915	926
IPR018521	TopoI_AS	ProSitePatterns	908	926
IPR011010	DNA_brk_join_enz	SUPERFAMILY	633	959
IPR014727	TopoI_cat_a/b-sub_euk	Gene3D	782	962
IPR013499	TopoI_euk	SMART	559	935
IPR025834	TopoI_C_dom	Pfam	895	962
IPR014711	TopoI_cat_a-hlx-sub_euk	Gene3D	633	781
IPR008336	TopoI_DNA-bd_euk	Pfam	419	630
IPR013500	TopoI_cat_euk	Pfam	633	858
IPR013034	DNA_topo_DNA_db_N_dom1	Gene3D	435	518
IPR013030	DNA_topo_DNA_db_N_dom2	Gene3D	415	630
IPR036202	TopoI_DNA-bd_euk_N_sf	SUPERFAMILY	417	632
IPR013500	TopoI_cat_euk	CDD	639	832

No CAZYmes available for this sequence

External Links

No external refs found!

Sobic.007G043500.2

Expression Profile

Co-expression Networks

Functional Annotation