1. Home
  2. Species
  3. Sorghum bicolor
  4. Sequence
  5. Sobic.007G048600.1

Sobic.007G048600.1


Description : FAD-binding Berberine family protein


Gene families : OG_01_0008062 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0008062_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.007G048600.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.007G048600.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_38
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_109


Type GO Term Name Evidence Source
MF GO:0016491 oxidoreductase activity ISM GOs from InterProScan
MF GO:0050660 flavin adenine dinucleotide binding ISM GOs from InterProScan
MF GO:0071949 FAD binding ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR016167 FAD-bd_PCMH_sub1 Gene3D 24 130
IPR012951 BBE Pfam 479 548
IPR036318 FAD-bd_PCMH-like_sf SUPERFAMILY 68 253
IPR016166 FAD-bd_PCMH ProSiteProfiles 68 252
IPR006094 Oxid_FAD_bind_N Pfam 74 218
IPR006093 Oxy_OxRdtase_FAD_BS ProSitePatterns 72 105
IPR016169 FAD-bd_PCMH_sub2 Gene3D 136 549
HMM Family HMM Length Query Length e-Value Query Start Query End
AA7 458 577 2e-83 67 547
No external refs found!