Sobic.007G051700.1

Description : Transducin family protein / WD-40 repeat family protein

Gene families : OG_01_0000290 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000290_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.007G051700.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.007G051700.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_280
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_240

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006355	regulation of DNA-templated transcription	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR015943	WD40/YVTN_repeat-like_dom_sf	Gene3D	541	682
IPR027728	Topless_fam	PANTHER	1	1131
IPR006595	CTLH_C	ProSiteProfiles	34	92
IPR011047	Quinoprotein_ADH-like_supfam	SUPERFAMILY	452	1047
IPR011045	N2O_reductase_N	SUPERFAMILY	339	515
IPR001680	WD40_rpt	SMART	486	527
IPR001680	WD40_rpt	SMART	530	573
IPR001680	WD40_rpt	SMART	396	436
IPR001680	WD40_rpt	SMART	824	866
IPR001680	WD40_rpt	SMART	869	909
IPR001680	WD40_rpt	SMART	576	616
IPR001680	WD40_rpt	SMART	912	951
IPR001680	WD40_rpt	SMART	336	375
IPR001680	WD40_rpt	SMART	966	1000
IPR001680	WD40_rpt	SMART	1002	1044
IPR001680	WD40_rpt	SMART	442	483
IPR006594	LisH	SMART	4	36
IPR015943	WD40/YVTN_repeat-like_dom_sf	Gene3D	313	537
IPR036322	WD40_repeat_dom_sf	SUPERFAMILY	977	1110
IPR001680	WD40_rpt	ProSiteProfiles	919	960
IPR001680	WD40_rpt	Pfam	446	483
IPR001680	WD40_rpt	Pfam	918	951
IPR015943	WD40/YVTN_repeat-like_dom_sf	Gene3D	765	1055
IPR001680	WD40_rpt	ProSiteProfiles	449	492
IPR006595	CTLH_C	SMART	34	92
IPR019775	WD40_repeat_CS	ProSitePatterns	470	484
IPR006594	LisH	ProSiteProfiles	4	36

No CAZYmes available for this sequence

External Links

No external refs found!