Sobic.007G085000.2

Description : Ribosomal protein L30/L7 family protein

Gene families : OG_01_0001016 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001016_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.007G085000.2
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.007G085000.2
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_300
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_150

Type	GO Term	Name	Evidence	Source
BP	GO:0000463	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	ISM	GOs from InterProScan
BP	GO:0000470	maturation of LSU-rRNA	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISM	GOs from InterProScan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015934	large ribosomal subunit	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
CC	GO:0022625	cytosolic large ribosomal subunit	ISM	GOs from InterProScan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR039699	Ribosomal_uL30	PANTHER	4	245
IPR018038	Ribosomal_uL30_CS	ProSitePatterns	105	137
IPR012988	Ribosomal_uL30_N_euk	Pfam	11	81
IPR036919	Ribo_uL30_ferredoxin-like_sf	SUPERFAMILY	86	245
IPR035808	Ribosomal_uL30_euk_arc	CDD	86	245
IPR016082	Ribosomal_uL30_ferredoxin-like	Pfam	87	137
IPR036919	Ribo_uL30_ferredoxin-like_sf	Gene3D	86	189
IPR036919	Ribo_uL30_ferredoxin-like_sf	Gene3D	190	245
IPR005998	Ribosomal_uL30_euk	TIGRFAM	12	245

No CAZYmes available for this sequence

External Links

No external refs found!

Sobic.007G085000.2

Expression Profile

Co-expression Networks

Functional Annotation