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  5. Sobic.007G087900.1

Sobic.007G087900.1


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0000072 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000072_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.007G087900.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.007G087900.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_6
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_71


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 475 509
IPR002885 Pentatricopeptide_rpt Pfam 159 206
IPR002885 Pentatricopeptide_rpt Pfam 509 558
IPR002885 Pentatricopeptide_rpt Pfam 334 383
IPR002885 Pentatricopeptide_rpt Pfam 264 313
IPR002885 Pentatricopeptide_rpt Pfam 439 488
IPR011990 TPR-like_helical_dom_sf Gene3D 241 400
IPR002885 Pentatricopeptide_rpt TIGRFAM 512 545
IPR002885 Pentatricopeptide_rpt TIGRFAM 232 264
IPR002885 Pentatricopeptide_rpt TIGRFAM 582 616
IPR002885 Pentatricopeptide_rpt TIGRFAM 52 85
IPR002885 Pentatricopeptide_rpt TIGRFAM 197 231
IPR002885 Pentatricopeptide_rpt TIGRFAM 373 405
IPR002885 Pentatricopeptide_rpt TIGRFAM 303 335
IPR002885 Pentatricopeptide_rpt TIGRFAM 124 153
IPR002885 Pentatricopeptide_rpt TIGRFAM 442 476
IPR002885 Pentatricopeptide_rpt TIGRFAM 547 580
IPR002885 Pentatricopeptide_rpt TIGRFAM 339 371
IPR002885 Pentatricopeptide_rpt TIGRFAM 89 122
IPR002885 Pentatricopeptide_rpt TIGRFAM 409 441
IPR002885 Pentatricopeptide_rpt TIGRFAM 268 300
IPR002885 Pentatricopeptide_rpt TIGRFAM 477 510
IPR002885 Pentatricopeptide_rpt TIGRFAM 162 195
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 615 649
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 545 579
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 265 299
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 370 404
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 122 156
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 50 84
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 580 614
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 300 334
IPR002885 Pentatricopeptide_rpt Pfam 232 262
IPR002885 Pentatricopeptide_rpt Pfam 583 605
IPR011990 TPR-like_helical_dom_sf Gene3D 490 607
IPR011990 TPR-like_helical_dom_sf Gene3D 3 154
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 440 474
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 86 121
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 230 264
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 195 229
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 405 439
IPR002885 Pentatricopeptide_rpt Pfam 118 149
IPR002885 Pentatricopeptide_rpt Pfam 48 71
IPR002885 Pentatricopeptide_rpt Pfam 401 432
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 160 194
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 335 369
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 510 544
IPR011990 TPR-like_helical_dom_sf Gene3D 608 714
IPR011990 TPR-like_helical_dom_sf Gene3D 405 489
IPR011990 TPR-like_helical_dom_sf Gene3D 155 240

No CAZYmes available for this sequence

No external refs found!