Sobic.007G092200.1

Description : PYRIMIDINE B

Gene families : OG_01_0012816 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0012816_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.007G092200.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.007G092200.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_195
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_58

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004070	aspartate carbamoyltransferase activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006206	pyrimidine nucleobase metabolic process	None	Extended
BP	GO:0006207	'de novo' pyrimidine nucleobase biosynthetic process	ISM	GOs from InterProScan
BP	GO:0006520	amino acid metabolic process	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009112	nucleobase metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016597	amino acid binding	ISM	GOs from InterProScan
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
MF	GO:0016743	carboxyl- or carbamoyltransferase activity	ISM	GOs from InterProScan
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
BP	GO:0019856	pyrimidine nucleobase biosynthetic process	None	Extended
MF	GO:0031406	carboxylic acid binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043177	organic acid binding	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046112	nucleobase biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072527	pyrimidine-containing compound metabolic process	None	Extended
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR006131	Asp_carbamoyltransf_Asp/Orn-bd	Pfam	215	366
IPR006130	Asp/Orn_carbamoylTrfase	ProSitePatterns	111	118
IPR036901	Asp/Orn_carbamoylTrfase_sf	SUPERFAMILY	63	368
IPR002082	Asp_carbamoyltransf	TIGRFAM	65	368
IPR036901	Asp/Orn_carbamoylTrfase_sf	Gene3D	66	364
IPR006132	Asp/Orn_carbamoyltranf_P-bd	Pfam	66	208
IPR002082	Asp_carbamoyltransf	Hamap	63	370
IPR006130	Asp/Orn_carbamoylTrfase	PRINTS	111	130
IPR006130	Asp/Orn_carbamoylTrfase	PRINTS	333	356
IPR006130	Asp/Orn_carbamoylTrfase	PRINTS	196	207
IPR006130	Asp/Orn_carbamoylTrfase	PRINTS	323	332
IPR036901	Asp/Orn_carbamoylTrfase_sf	Gene3D	196	355

No CAZYmes available for this sequence

External Links

No external refs found!

Sobic.007G092200.1

Expression Profile

Co-expression Networks

Functional Annotation