Sobic.007G125200.1

Description : ATPase, AAA-type, CDC48 protein

Gene families : OG_01_0048912 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0048912_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.007G125200.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.007G125200.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_93
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_107

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	ISM	GOs from InterProScan
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	ISM	GOs from InterProScan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR004201	Cdc48_dom2	Pfam	132	197
IPR041569	AAA_lid_3	Pfam	679	711
IPR041569	AAA_lid_3	Pfam	399	439
IPR027417	P-loop_NTPase	SUPERFAMILY	209	461
IPR009010	Asp_de-COase-like_dom_sf	SUPERFAMILY	26	111
IPR003338	CDC4_N-term_subdom	Pfam	40	111
IPR003959	ATPase_AAA_core	Pfam	521	654
IPR003959	ATPase_AAA_core	Pfam	247	376
IPR005938	AAA_ATPase_CDC48	TIGRFAM	42	759
IPR003593	AAA+_ATPase	SMART	243	379
IPR003593	AAA+_ATPase	SMART	517	656
IPR003960	ATPase_AAA_CS	ProSitePatterns	347	365
IPR029067	CDC48_domain_2-like_sf	SUPERFAMILY	114	205
IPR003338	CDC4_N-term_subdom	SMART	35	114
IPR004201	Cdc48_dom2	SMART	131	198
IPR027417	P-loop_NTPase	Gene3D	478	751
IPR027417	P-loop_NTPase	SUPERFAMILY	479	756
IPR027417	P-loop_NTPase	Gene3D	211	377

No CAZYmes available for this sequence

External Links

No external refs found!