Sobic.007G126500.2

Description : hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases

Gene families : OG_01_0009743 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0009743_tree

Sequence : cds (download), rna (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.007G126500.2
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.007G126500.2
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_72
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_220

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0003724	RNA helicase activity	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	GOs from InterProScan
MF	GO:0008186	ATP-dependent activity, acting on RNA	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR001650	Helicase_C	ProSiteProfiles	289	438
IPR011545	DEAD/DEAH_box_helicase_dom	Pfam	85	251
IPR027417	P-loop_NTPase	Gene3D	30	268
IPR014001	Helicase_ATP-bd	SMART	80	281
IPR012541	DBP10_C	SMART	663	723
IPR014001	Helicase_ATP-bd	ProSiteProfiles	92	265
IPR027417	P-loop_NTPase	SUPERFAMILY	131	417
IPR012541	DBP10_C	Pfam	663	722
IPR027417	P-loop_NTPase	Gene3D	279	484
IPR001650	Helicase_C	SMART	318	399
IPR001650	Helicase_C	Pfam	288	399
IPR014014	RNA_helicase_DEAD_Q_motif	ProSiteProfiles	61	89

No CAZYmes available for this sequence

External Links

No external refs found!

Sobic.007G126500.2

Expression Profile

Co-expression Networks

Functional Annotation