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  5. Sobic.007G156500.1

Sobic.007G156500.1


Description : alpha-amylase-like


Gene families : OG_01_0000440 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000440_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.007G156500.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.007G156500.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_10
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_714


Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity ISM GOs from InterProScan
MF GO:0004556 alpha-amylase activity ISM GOs from InterProScan
MF GO:0005509 calcium ion binding ISM GOs from InterProScan
BP GO:0005975 carbohydrate metabolic process ISM GOs from InterProScan
MF GO:0043169 cation binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR006046 Alpha_amylase PRINTS 107 118
IPR006046 Alpha_amylase PRINTS 200 211
IPR006046 Alpha_amylase PRINTS 304 316
IPR012850 A-amylase_bs_C SMART 367 427
IPR012850 A-amylase_bs_C Pfam 368 426
IPR013780 Glyco_hydro_b Gene3D 371 427
IPR006047 Glyco_hydro_13_cat_dom SMART 27 366
IPR006047 Glyco_hydro_13_cat_dom Pfam 52 213
IPR013775 A-amylase_pln PIRSF 1 428
IPR017853 Glycoside_hydrolase_SF SUPERFAMILY 30 366

No CAZYmes available for this sequence

No external refs found!