Sobic.007G166500.1

Description : expansin A16

Gene families : OG_01_0044428 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0044428_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.007G166500.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.007G166500.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_78
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_266

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009664	plant-type cell wall organization	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR007117	Expansin_CBD	Pfam	181	259
IPR007112	Expansin/allergen_DPBB_dom	ProSiteProfiles	74	180
IPR036908	RlpA-like_sf	Gene3D	42	176
IPR007118	Expan_Lol_pI	PRINTS	256	270
IPR007118	Expan_Lol_pI	PRINTS	55	70
IPR007118	Expan_Lol_pI	PRINTS	218	232
IPR007118	Expan_Lol_pI	PRINTS	73	91
IPR007118	Expan_Lol_pI	PRINTS	95	113
IPR007118	Expan_Lol_pI	PRINTS	163	179
IPR007117	Expansin_CBD	ProSiteProfiles	190	270
IPR036749	Expansin_CBD_sf	SUPERFAMILY	177	269
IPR036908	RlpA-like_sf	SUPERFAMILY	55	198
IPR002963	Expansin	PRINTS	179	191
IPR002963	Expansin	PRINTS	191	212
IPR002963	Expansin	PRINTS	155	168
IPR002963	Expansin	PRINTS	227	248
IPR002963	Expansin	PRINTS	86	100
IPR002963	Expansin	PRINTS	256	272
IPR002963	Expansin	PRINTS	138	155
IPR002963	Expansin	PANTHER	15	274
IPR007112	Expansin/allergen_DPBB_dom	SMART	91	170
IPR036749	Expansin_CBD_sf	Gene3D	181	274
IPR009009	RlpA-like_DPBB	Pfam	92	170

No CAZYmes available for this sequence

External Links

No external refs found!