Sobic.007G180450.1

Description : RHOMBOID-like protein 3

Gene families : OG_01_0038019 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0038019_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.007G180450.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.007G180450.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_330
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_55

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004175	endopeptidase activity	None	Extended
MF	GO:0004252	serine-type endopeptidase activity	ISM	GOs from InterProScan
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
MF	GO:0004650	polygalacturonase activity	ISM	GOs from InterProScan
BP	GO:0005975	carbohydrate metabolic process	ISM	GOs from InterProScan
BP	GO:0006508	proteolysis	ISM	GOs from InterProScan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0008236	serine-type peptidase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
MF	GO:0017171	serine hydrolase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR035952	Rhomboid-like_sf	SUPERFAMILY	427	583
IPR022764	Peptidase_S54_rhomboid_dom	Pfam	439	582
IPR002610	Peptidase_S54_rhomboid-like	PANTHER	418	655
IPR012334	Pectin_lyas_fold	Gene3D	25	412
IPR035952	Rhomboid-like_sf	Gene3D	419	582
IPR000743	Glyco_hydro_28	ProSitePatterns	242	255
IPR011050	Pectin_lyase_fold/virulence	SUPERFAMILY	32	383
IPR006626	PbH1	SMART	212	233
IPR006626	PbH1	SMART	330	370
IPR006626	PbH1	SMART	235	255
IPR006626	PbH1	SMART	265	286
IPR006626	PbH1	SMART	162	211
IPR006626	PbH1	SMART	295	316
IPR000743	Glyco_hydro_28	Pfam	67	378

HMM Family	HMM Length	Query Length	e-Value	Query Start	Query End
GH28	325	656	4.3e-82	59	388

External Links

No external refs found!