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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_01_0003585 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003585_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.007G201400.1 | No neighbors in network |
| Neighborhood | Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.007G201400.1 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_71 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| MF | GO:0008270 | zinc ion binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 374 | 408 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 777 | 811 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 530 | 640 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 794 | 976 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 162 | 196 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 475 | 509 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 812 | 842 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 265 | 297 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 165 | 198 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 477 | 510 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 377 | 410 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 237 | 263 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 447 | 473 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 779 | 813 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 679 | 705 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 815 | 847 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 578 | 612 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 263 | 297 |
| IPR032867 | DYW_dom | Pfam | 951 | 1074 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 265 | 294 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 679 | 705 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 351 | 373 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 477 | 506 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 447 | 472 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 851 | 875 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 237 | 261 |
| IPR011990 | TPR-like_helical_dom_sf | SUPERFAMILY | 140 | 935 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 677 | 707 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 223 | 316 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 94 | 222 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 335 | 424 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 434 | 527 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 641 | 737 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 576 | 610 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 575 | 623 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 776 | 825 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 162 | 208 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 374 | 419 |
No CAZYmes available for this sequence
| No external refs found! |