Sobic.007G202900.2

Description : methyl-CPG-binding domain 8

Gene families : OG_01_0003599 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003599_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.007G202900.2
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.007G202900.2
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_252
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_187

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR001739	Methyl_CpG_DNA-bd	ProSiteProfiles	202	275
IPR013087	Znf_C2H2_type	SMART	310	333
IPR013087	Znf_C2H2_type	SMART	356	378
IPR013087	Znf_C2H2_type	SMART	444	466
IPR001739	Methyl_CpG_DNA-bd	Pfam	212	256
IPR037472	MBD8	PANTHER	405	687
IPR037472	MBD8	PANTHER	1	404
IPR013087	Znf_C2H2_type	ProSiteProfiles	310	338
IPR013087	Znf_C2H2_type	ProSitePatterns	446	466
IPR013087	Znf_C2H2_type	ProSiteProfiles	444	471
IPR016177	DNA-bd_dom_sf	SUPERFAMILY	207	256
IPR013087	Znf_C2H2_type	ProSitePatterns	312	333
IPR013087	Znf_C2H2_type	ProSitePatterns	358	378
IPR013087	Znf_C2H2_type	ProSiteProfiles	356	383

No CAZYmes available for this sequence

External Links

No external refs found!