Sobic.007G207900.1

Description : AT hook motif DNA-binding family protein

Gene families : OG_01_0001253 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001253_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.007G207900.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.007G207900.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_233
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_168

Type	GO Term	Name	Evidence	Source
MF	GO:0000217	DNA secondary structure binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISM	GOs from InterProScan
MF	GO:0003680	minor groove of adenine-thymine-rich DNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR005175	PPC_dom	Pfam	186	300
IPR039605	AHL	PANTHER	9	372
IPR017956	AT_hook_DNA-bd_motif	SMART	96	108
IPR017956	AT_hook_DNA-bd_motif	SMART	159	171
IPR005175	PPC_dom	ProSiteProfiles	178	324
IPR005175	PPC_dom	CDD	185	299

No CAZYmes available for this sequence

External Links

No external refs found!