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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_01_0012259 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0012259_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.007G208400.1 | |
| Neighborhood | Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.007G208400.1 | No neighbors in network |
| Cluster | Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_127 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| MF | GO:0008270 | zinc ion binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 106 | 136 |
| IPR032867 | DYW_dom | Pfam | 508 | 632 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 137 | 172 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 410 | 433 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 304 | 334 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 238 | 271 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 307 | 335 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 111 | 139 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 410 | 433 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 210 | 238 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 337 | 370 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 382 | 524 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 236 | 270 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 291 | 381 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 190 | 290 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 302 | 331 |
| IPR011990 | TPR-like_helical_dom_sf | SUPERFAMILY | 315 | 497 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 36 | 189 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 136 | 184 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 236 | 282 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 334 | 381 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 205 | 235 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 335 | 369 |
No CAZYmes available for this sequence
| No external refs found! |