Sobic.007G220100.1

Description : RING domain ligase2

Gene families : OG_01_0017386 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0017386_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.007G220100.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.007G220100.1	No neighbors in network
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_20

Type	GO Term	Name	Evidence	Source
BP	GO:0000209	protein polyubiquitination	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016746	acyltransferase activity	None	Extended
MF	GO:0016755	aminoacyltransferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043687	post-translational protein modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
MF	GO:0061630	ubiquitin protein ligase activity	ISM	GOs from InterProScan
MF	GO:0061659	ubiquitin-like protein ligase activity	None	Extended
BP	GO:0070534	protein K63-linked ubiquitination	ISM	GOs from InterProScan
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR013083	Znf_RING/FYVE/PHD	Gene3D	349	402
IPR001841	Znf_RING	ProSiteProfiles	359	392
IPR002035	VWF_A	SMART	63	266
IPR036465	vWFA_dom_sf	SUPERFAMILY	65	247
IPR045317	RING-HC_RGLG1/2	CDD	359	402
IPR010734	Copine_C	CDD	36	292
IPR010734	Copine_C	Pfam	88	303
IPR001841	Znf_RING	SMART	359	391

No CAZYmes available for this sequence

External Links

No external refs found!