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Description : Tetratricopeptide repeat (TPR)-like superfamily protein
Gene families : OG_01_0015784 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0015784_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.007G226400.1 | |
| Neighborhood | Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.007G226400.1 | No neighbors in network |
| Cluster | Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_15 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 335 | 369 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 110 | 144 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 234 | 268 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 337 | 370 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 143 | 174 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 372 | 399 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 174 | 205 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 205 | 234 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 236 | 269 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 113 | 143 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 334 | 381 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 233 | 280 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 140 | 168 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 45 | 82 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 307 | 552 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 203 | 306 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 18 | 140 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 141 | 202 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 174 | 204 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 22 | 44 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 410 | 433 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 81 | 103 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 172 | 206 |
No CAZYmes available for this sequence
| No external refs found! |