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  5. Sobic.008G001200.1

Sobic.008G001200.1


Description : RNA binding (RRM/RBD/RNP motifs) family protein


Gene families : OG_01_0002312 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002312_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.008G001200.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.008G001200.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_245
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_52


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
MF GO:0004842 ubiquitin-protein transferase activity ISM GOs from InterProScan
CC GO:0030014 CCR4-NOT complex ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000504 RRM_dom Pfam 142 202
IPR039780 Mot2 PANTHER 4 1155
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 123 204
IPR003954 RRM_dom_euk SMART 123 204
IPR034261 CNOT4_RRM CDD 117 216
IPR039515 NOT4_mRING-HC-C4C4 CDD 12 61
IPR035979 RBD_domain_sf SUPERFAMILY 116 202
IPR001841 Znf_RING ProSiteProfiles 12 60
IPR000504 RRM_dom ProSiteProfiles 122 208
IPR013083 Znf_RING/FYVE/PHD Gene3D 2 80

No CAZYmes available for this sequence

No external refs found!