Sobic.008G009500.2

Description : Pentatricopeptide repeat (PPR) superfamily protein

Gene families : OG_01_0009468 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0009468_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.008G009500.2
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.008G009500.2	No neighbors in network
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_181

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	627	661
IPR002885	Pentatricopeptide_rpt	Pfam	702	725
IPR002885	Pentatricopeptide_rpt	Pfam	306	331
IPR002885	Pentatricopeptide_rpt	Pfam	128	157
IPR002885	Pentatricopeptide_rpt	Pfam	235	263
IPR002885	Pentatricopeptide_rpt	Pfam	98	126
IPR045215	PPR_prot_At1g15510	PANTHER	259	806
IPR045215	PPR_prot_At1g15510	PANTHER	32	178
IPR045215	PPR_prot_At1g15510	PANTHER	186	254
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	232	266
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	126	160
IPR011990	TPR-like_helical_dom_sf	Gene3D	382	492
IPR011990	TPR-like_helical_dom_sf	Gene3D	493	615
IPR011990	TPR-like_helical_dom_sf	Gene3D	181	284
IPR011990	TPR-like_helical_dom_sf	Gene3D	285	381
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	333	367
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	434	468
IPR002885	Pentatricopeptide_rpt	Pfam	433	480
IPR002885	Pentatricopeptide_rpt	Pfam	332	377
IPR002885	Pentatricopeptide_rpt	Pfam	626	674
IPR002885	Pentatricopeptide_rpt	TIGRFAM	128	162
IPR002885	Pentatricopeptide_rpt	TIGRFAM	436	470
IPR002885	Pentatricopeptide_rpt	TIGRFAM	630	657
IPR002885	Pentatricopeptide_rpt	TIGRFAM	335	368
IPR011990	TPR-like_helical_dom_sf	Gene3D	616	806
IPR011990	TPR-like_helical_dom_sf	Gene3D	44	180

No CAZYmes available for this sequence

External Links

No external refs found!