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  5. Sobic.008G011100.3

Sobic.008G011100.3


Description : Nucleoporin autopeptidase


Gene families : OG_01_0000821 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000821_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.008G011100.3
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.008G011100.3
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_106
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_187


Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore ISM GOs from InterProScan
BP GO:0006913 nucleocytoplasmic transport ISM GOs from InterProScan
MF GO:0017056 structural constituent of nuclear pore ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR007230 Nup98_auto-Pept-S59_dom Pfam 709 855
IPR037665 Nucleoporin_S59-like PANTHER 708 854
IPR037665 Nucleoporin_S59-like PANTHER 7 702
IPR007230 Nup98_auto-Pept-S59_dom ProSiteProfiles 708 850
IPR036903 Nup98_auto-Pept-S59_dom_sf Gene3D 705 856
IPR036903 Nup98_auto-Pept-S59_dom_sf SUPERFAMILY 708 855

No CAZYmes available for this sequence

No external refs found!