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  5. Sobic.008G025400.2

Sobic.008G025400.2


Description : ankyrin repeat family protein


Gene families : OG_01_0021405 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0021405_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.008G025400.2
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_19


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 350 461
IPR002110 Ankyrin_rpt SMART 225 254
IPR002110 Ankyrin_rpt SMART 59 89
IPR002110 Ankyrin_rpt SMART 127 156
IPR002110 Ankyrin_rpt SMART 93 123
IPR002110 Ankyrin_rpt SMART 192 221
IPR002110 Ankyrin_rpt SMART 159 188
IPR036770 Ankyrin_rpt-contain_sf Gene3D 22 325
IPR002110 Ankyrin_rpt ProSiteProfiles 93 122
IPR013105 TPR_2 Pfam 419 452
IPR002110 Ankyrin_rpt Pfam 25 122
IPR002110 Ankyrin_rpt Pfam 132 222
IPR011990 TPR-like_helical_dom_sf Gene3D 347 463
IPR002110 Ankyrin_rpt ProSiteProfiles 127 159
IPR002110 Ankyrin_rpt PRINTS 60 75
IPR002110 Ankyrin_rpt PRINTS 143 157
IPR019734 TPR_repeat SMART 385 418
IPR019734 TPR_repeat SMART 349 382
IPR019734 TPR_repeat SMART 419 452
IPR036770 Ankyrin_rpt-contain_sf SUPERFAMILY 24 264
IPR019734 TPR_repeat ProSiteProfiles 419 452
IPR002110 Ankyrin_rpt ProSiteProfiles 225 257

No CAZYmes available for this sequence

No external refs found!