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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_01_0006439 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006439_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.008G037700.1 | |
| Neighborhood | Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.008G037700.1 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_326 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_220 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | Pfam | 383 | 432 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 559 | 606 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 453 | 499 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 277 | 328 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 628 | 677 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 664 | 698 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 351 | 381 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 694 | 726 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 351 | 384 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 596 | 629 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 666 | 699 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 457 | 490 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 631 | 665 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 701 | 734 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 280 | 309 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 561 | 595 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 421 | 454 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 317 | 344 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 386 | 420 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 491 | 525 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 384 | 418 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 489 | 523 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 454 | 488 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 419 | 453 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 653 | 762 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 124 | 345 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 504 | 652 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 594 | 628 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 629 | 663 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 559 | 593 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 278 | 312 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 243 | 277 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 315 | 345 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 349 | 383 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 346 | 411 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 412 | 503 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 699 | 733 |
No CAZYmes available for this sequence
| No external refs found! |