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  5. Sobic.008G040000.1

Sobic.008G040000.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0005328 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005328_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.008G040000.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.008G040000.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_101
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_215


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 736 770
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 494 528
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 285 319
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 666 700
IPR011990 TPR-like_helical_dom_sf Gene3D 33 210
IPR011990 TPR-like_helical_dom_sf Gene3D 315 381
IPR011990 TPR-like_helical_dom_sf Gene3D 453 521
IPR011990 TPR-like_helical_dom_sf Gene3D 382 452
IPR011990 TPR-like_helical_dom_sf Gene3D 728 792
IPR011990 TPR-like_helical_dom_sf Gene3D 239 314
IPR011990 TPR-like_helical_dom_sf Gene3D 796 848
IPR011990 TPR-like_helical_dom_sf Gene3D 522 588
IPR011990 TPR-like_helical_dom_sf Gene3D 589 660
IPR011990 TPR-like_helical_dom_sf Gene3D 661 727
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 701 735
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 459 493
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 822 856
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 320 354
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 215 249
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 424 458
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 631 665
IPR002885 Pentatricopeptide_rpt TIGRFAM 860 891
IPR002885 Pentatricopeptide_rpt TIGRFAM 738 771
IPR002885 Pentatricopeptide_rpt TIGRFAM 895 919
IPR002885 Pentatricopeptide_rpt TIGRFAM 633 666
IPR002885 Pentatricopeptide_rpt TIGRFAM 182 216
IPR002885 Pentatricopeptide_rpt TIGRFAM 598 631
IPR002885 Pentatricopeptide_rpt TIGRFAM 287 321
IPR002885 Pentatricopeptide_rpt TIGRFAM 824 858
IPR002885 Pentatricopeptide_rpt TIGRFAM 531 565
IPR002885 Pentatricopeptide_rpt TIGRFAM 497 529
IPR002885 Pentatricopeptide_rpt TIGRFAM 252 285
IPR002885 Pentatricopeptide_rpt TIGRFAM 323 355
IPR002885 Pentatricopeptide_rpt TIGRFAM 427 460
IPR002885 Pentatricopeptide_rpt TIGRFAM 217 250
IPR002885 Pentatricopeptide_rpt TIGRFAM 391 424
IPR002885 Pentatricopeptide_rpt TIGRFAM 668 701
IPR002885 Pentatricopeptide_rpt TIGRFAM 704 737
IPR002885 Pentatricopeptide_rpt TIGRFAM 461 495
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 596 630
IPR002885 Pentatricopeptide_rpt Pfam 215 262
IPR002885 Pentatricopeptide_rpt Pfam 735 782
IPR002885 Pentatricopeptide_rpt Pfam 319 367
IPR002885 Pentatricopeptide_rpt Pfam 458 505
IPR002885 Pentatricopeptide_rpt Pfam 598 644
IPR002885 Pentatricopeptide_rpt Pfam 528 577
IPR002885 Pentatricopeptide_rpt Pfam 666 714
IPR002885 Pentatricopeptide_rpt Pfam 824 869
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 529 563
IPR011990 TPR-like_helical_dom_sf Gene3D 849 986
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 250 284
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 857 891
IPR002885 Pentatricopeptide_rpt Pfam 176 204
IPR002885 Pentatricopeptide_rpt Pfam 280 312
IPR002885 Pentatricopeptide_rpt Pfam 384 416
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 180 214
IPR002885 Pentatricopeptide_rpt Pfam 895 920
IPR002885 Pentatricopeptide_rpt Pfam 427 455
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 389 423

No CAZYmes available for this sequence

No external refs found!