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  5. Sevir.9G021800.1

Sevir.9G021800.1


Description : 5\'-3\' exonuclease family protein


Gene families : OG_01_0004981 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004981_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.9G021800.1 No neighbors in network
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.9G021800.1
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_54


Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISM GOs from InterProScan
MF GO:0003824 catalytic activity ISM GOs from InterProScan
MF GO:0004518 nuclease activity ISM GOs from InterProScan
MF GO:0016788 hydrolase activity, acting on ester bonds ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR019974 XPG_CS ProSitePatterns 150 164
IPR036279 5-3_exonuclease_C_sf SUPERFAMILY 219 348
IPR008918 HhH2 SMART 221 254
IPR006085 XPG_DNA_repair_N Pfam 1 107
IPR029060 PIN-like_dom_sf SUPERFAMILY 2 234
IPR006086 XPG-I_dom SMART 147 219
IPR023426 Flap_endonuc Hamap 1 345
IPR006084 XPG/Rad2 PANTHER 1 396
IPR006085 XPG_DNA_repair_N SMART 1 108
IPR019974 XPG_CS ProSitePatterns 80 94
IPR006086 XPG-I_dom Pfam 150 234
IPR006084 XPG/Rad2 PRINTS 146 163
IPR006084 XPG/Rad2 PRINTS 224 239
IPR006084 XPG/Rad2 PRINTS 28 42
IPR006084 XPG/Rad2 PRINTS 167 187
IPR006084 XPG/Rad2 PRINTS 82 101
IPR002421 5-3_exonuclease SMART 28 281

No CAZYmes available for this sequence

No external refs found!