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  5. Sobic.008G096401.1

Sobic.008G096401.1


Description : beta-xylosidase 1


Gene families : OG_01_0014347 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0014347_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.008G096401.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.008G096401.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_353
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_12


Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds ISM GOs from InterProScan
BP GO:0005975 carbohydrate metabolic process ISM GOs from InterProScan
MF GO:0009044 xylan 1,4-beta-xylosidase activity ISM GOs from InterProScan
BP GO:0045493 xylan catabolic process ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001764 Glyco_hydro_3_N Pfam 100 261
IPR044993 BXL PANTHER 61 428
IPR017853 Glycoside_hydrolase_SF SUPERFAMILY 53 361
IPR036881 Glyco_hydro_3_C_sf Gene3D 346 436
IPR036962 Glyco_hydro_3_N_sf Gene3D 70 339
HMM Family HMM Length Query Length e-Value Query Start Query End
GH3 216 443 4.2e-36 101 262
No external refs found!