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Description : pumilio 12
Gene families : OG_01_0016104 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0016104_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.008G098700.1 | |
| Neighborhood | Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.008G098700.1 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_203 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_1 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003723 | RNA binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR011989 | ARM-like | Gene3D | 337 | 675 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 503 | 538 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 507 | 538 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 545 | 562 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 395 | 429 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 623 | 644 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 361 | 391 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 474 | 502 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 434 | 468 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 583 | 613 |
| IPR016024 | ARM-type_fold | SUPERFAMILY | 347 | 670 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 613 | 648 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 503 | 538 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 575 | 610 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 391 | 426 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 430 | 466 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 539 | 574 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 355 | 390 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 467 | 502 |
| IPR033712 | Pumilio_RNA-bd | CDD | 357 | 670 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 539 | 574 |
| IPR033133 | PUM-HD | ProSiteProfiles | 333 | 675 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 391 | 427 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 355 | 390 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 430 | 466 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 611 | 649 |
No CAZYmes available for this sequence
| No external refs found! |