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  5. Sobic.008G115500.1

Sobic.008G115500.1


Description : syntaxin of plants 131


Gene families : OG_01_0001180 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001180_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.008G115500.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.008G115500.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_69
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_35


Type GO Term Name Evidence Source
MF GO:0005484 SNAP receptor activity ISM GOs from InterProScan
BP GO:0006886 intracellular protein transport ISM GOs from InterProScan
CC GO:0016020 membrane ISM GOs from InterProScan
BP GO:0016192 vesicle-mediated transport ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR006011 Syntaxin_N Pfam 42 244
IPR000727 T_SNARE_dom ProSiteProfiles 209 271
IPR010989 SNARE SUPERFAMILY 38 264
IPR006011 Syntaxin_N SMART 34 160
IPR000727 T_SNARE_dom Pfam 245 297
IPR006012 Syntaxin/epimorphin_CS ProSitePatterns 215 254
IPR045242 Syntaxin PANTHER 3 300
IPR000727 T_SNARE_dom SMART 204 271
IPR006011 Syntaxin_N CDD 39 196

No CAZYmes available for this sequence

No external refs found!