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Description : pentatricopeptide (PPR) domain protein 40
Gene families : OG_01_0009603 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0009603_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.008G127550.1 | |
| Neighborhood | Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.008G127550.1 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_195 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_650 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | Pfam | 12 | 41 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 152 | 180 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 222 | 251 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 44 | 78 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 202 | 317 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 387 | 506 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 324 | 358 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 289 | 323 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 79 | 113 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 397 | 442 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 254 | 299 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 323 | 372 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 43 | 92 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 1 | 94 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 95 | 201 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 318 | 386 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 254 | 288 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 46 | 80 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 362 | 395 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 431 | 461 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 291 | 325 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 257 | 289 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 326 | 360 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 222 | 251 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 396 | 430 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 81 | 112 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 12 | 45 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 152 | 184 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 394 | 428 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 429 | 463 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 149 | 183 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 359 | 393 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 9 | 43 |
No CAZYmes available for this sequence
| No external refs found! |